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Biological Classification

Introduction

What is this section about?

This section explains how scientists have tried to organize living things into groups over time, and how our understanding of classification has changed.

Simple Explanation:

People have always tried to classify living things, even before modern science. Early classifications were based on how we used organisms—for food, shelter, or clothing.

The first more scientific attempt was by Aristotle. He grouped plants into trees, shrubs, and herbs, and animals into those with red blood and those without.

Later, Linnaeus developed a two-kingdom system:

  • Plantae: All plants

  • Animalia: All animals

This system was simple but had problems. It didn't distinguish between:

  • Prokaryotes and eukaryotes: Prokaryotes (like bacteria) don't have a nucleus in their cells, while eukaryotes (like plants and animals) do.

  • Unicellular and multicellular organisms: Unicellular organisms are made of one cell, while multicellular organisms are made of many.

  • Photosynthetic and non-photosynthetic organisms: Photosynthetic organisms (like plants) make their own food using sunlight, while non-photosynthetic organisms (like fungi) get their food from other sources.

Because of these problems, the two-kingdom system wasn't good enough. Scientists realized they needed to consider more characteristics, like cell structure, how organisms get food, how they reproduce, and their evolutionary relationships.

R.H. Whittaker proposed a five-kingdom system in 1969:

  • Monera: Prokaryotes (bacteria)

  • Protista: Mostly unicellular eukaryotes

  • Fungi: Non-photosynthetic eukaryotes with cell walls made of chitin

  • Plantae: Multicellular, photosynthetic eukaryotes with cell walls made of cellulose

  • Animalia: Multicellular, heterotrophic eukaryotes without cell walls

This five-kingdom system was a big improvement. It separated prokaryotes into their own kingdom (Monera) and created a separate kingdom for fungi, which are very different from plants. It also grouped many single-celled eukaryotic organisms into the Protista kingdom.

Even this system isn't perfect, and scientists continue to refine our understanding of classification. There's even a "three-domain system" that further divides Monera and results in a six-kingdom classification (which you'll learn about later).

The key takeaway is that our understanding of how to classify living things has changed over time as we've learned more about them. We now try to create classification systems that reflect evolutionary relationships (how organisms are related through common ancestors), not just physical similarities.

Simple Conclusion:

Scientists have tried different ways to classify living things. The two-kingdom system (plants and animals) was too simple. Whittaker's five-kingdom system (Monera, Protista, Fungi, Plantae, Animalia) was a major advancement because it considered more characteristics, including cell structure and how organisms get food. Our understanding of classification continues to evolve as we learn more about life on Earth, and we now try to classify organisms based on their evolutionary relationships.

Kingdom Monera

What is this section about?

This section describes the characteristics of bacteria, which belong to the Kingdom Monera.

Simple Explanation:

Kingdom Monera is made up entirely of bacteria. These are tiny organisms that are everywhere! They're the most common microorganisms on Earth. You can find them in soil, hot springs, deserts, snow, deep oceans—almost anywhere. Some even live in or on other living things as parasites (harming the host organism).

Bacteria are grouped into four main shapes:

  • Coccus (plural: cocci): Spherical (round)

  • Bacillus (plural: bacilli): Rod-shaped

  • Vibrio (plural: vibrio): Comma-shaped

  • Spirillum (plural: spirilla): Spiral-shaped

Even though bacteria are simple in structure (they're single cells), they are very complex in how they behave and get energy. They have a huge variety of ways to get food (called metabolic diversity).

There are two main ways bacteria get food:

  • Autotrophic: They make their own food. Some do this through photosynthesis (using sunlight like plants), and others do it through chemosynthesis (using chemicals for energy).

  • Heterotrophic: They get their food from other organisms or from dead organic matter (like decaying plants or animals). Most bacteria are heterotrophic.

Simple Conclusion:

Kingdom Monera consists of bacteria, which are incredibly abundant and found in almost every environment. They come in different shapes and have diverse ways of getting food. Some make their own food (autotrophs), while most get it from other sources (heterotrophs). Despite their simple structure, bacteria are complex in their behavior and metabolism.

Archaebacteria and Eubacteria

What is this section about?

This section describes the two main types of bacteria within the Kingdom Monera: Archaebacteria and Eubacteria.

Simple Explanation:

There are two main groups of bacteria:

  • Archaebacteria: These are special bacteria that live in very extreme environments:

    • Halophiles: Very salty places.

    • Thermoacidophiles: Hot springs.

    • Methanogens: Marshy areas.

  • Archaebacteria are different from other bacteria because their cell walls are made of different materials. This difference allows them to survive in these harsh conditions. Methanogens, a type of archaebacteria, live in the guts of animals like cows and help produce methane (biogas) from their waste.

  • Eubacteria: These are the "true bacteria." They are characterized by:

    • A rigid cell wall.

    • If they can move, they have a flagellum (a tail-like structure).

  • A very important group of eubacteria are the cyanobacteria (also called blue-green algae). They have chlorophyll (like plants) and make their own food through photosynthesis. They can be single-celled, live in colonies, or form filaments. They live in water (freshwater and marine) and on land. Sometimes they grow rapidly in polluted water, forming "blooms." Some cyanobacteria can take nitrogen from the air and convert it into a form that other organisms can use. They do this in special cells called heterocysts. Examples are Nostoc and Anabaena.

    Other eubacteria are chemosynthetic autotrophs. They get energy by breaking down inorganic chemicals like nitrates, nitrites, and ammonia. This is very important for recycling nutrients in the environment.

    Most eubacteria are heterotrophs, meaning they get their food from other organisms or dead organic matter. Many are decomposers, breaking down dead plants and animals. Some are helpful to humans:

    • Making curd (yogurt) from milk.

    • Producing antibiotics.

    • Helping plants (like legumes) get nitrogen.

  • However, some eubacteria are pathogens, meaning they cause diseases in humans, animals, and plants. Examples of bacterial diseases are cholera, typhoid, tetanus, and citrus canker.

    Bacteria usually reproduce by fission (splitting in two). Sometimes, when conditions are bad, they form spores to survive. They can also exchange DNA with each other in a simple form of "sexual reproduction."

    Finally, there are Mycoplasma. These are very small bacteria that don't have a cell wall at all. They can live without oxygen, and some cause diseases in animals and plants.

Simple Conclusion:

Kingdom Monera includes two main types of bacteria: Archaebacteria, which live in extreme environments, and Eubacteria, which are the "true bacteria" and are found everywhere. Eubacteria include photosynthetic cyanobacteria, chemosynthetic bacteria that recycle nutrients, and heterotrophic bacteria, some of which are helpful and some of which cause diseases. Mycoplasma are unusual bacteria because they lack a cell wall.


Kingdom Protista

What is this section about?

This section describes the characteristics of protists, a diverse group of mostly single-celled eukaryotic organisms.

Simple Explanation:

Kingdom Protista includes mostly single-celled organisms that have a nucleus (eukaryotes). However, it's a bit of a "catch-all" group, and it can be hard to define exactly what a protist is. Some protists are very plant-like, some are animal-like, and some are fungus-like.

Protists are mostly found in water. They are a link between the other kingdoms: plants, animals, and fungi. Because they are eukaryotes, their cells have a nucleus and other membrane-bound organelles. Some have flagella (whip-like tails) or cilia (tiny hairs) for movement. They reproduce both asexually (by themselves) and sexually (with another protist).

Here are the main groups of protists:

  • Chrysophytes: This group includes diatoms (single-celled algae with glass-like shells) and golden algae (desmids). They live in fresh and salt water and float in currents (plankton). They are mostly photosynthetic. Diatoms have cell walls made of silica (glass), which form two overlapping halves, like a soapbox. When diatoms die, these shells build up on the ocean floor, forming "diatomaceous earth," which is used in polishing and filtering. Diatoms are important producers of food in the oceans.

  • Dinoflagellates: These are mostly marine and photosynthetic. They can be different colors (yellow, green, brown, blue, or red) depending on their pigments. They have cell walls with stiff plates. Most have two flagella that help them spin through the water. Sometimes, dinoflagellates multiply very quickly, causing "red tides," which can release toxins that kill fish and other marine life. An example is Gonyaulax.

  • Euglenoids: These are mostly found in fresh, still water. They don't have a cell wall but have a flexible protein layer called a pellicle. They have two flagella. They are usually photosynthetic, but if there's no sunlight, they can eat other small organisms like heterotrophs. Their pigments are similar to those in plants. An example is Euglena.

  • Slime Moulds: These are like fungus-like protists that live on decaying plants. They move around and engulf organic material. When conditions are good, they form a large mass called a plasmodium. When conditions become harsh, the plasmodium forms fruiting bodies that release spores. These spores are very tough and can survive for a long time.

  • Protozoans: These are animal-like protists that are heterotrophs (they eat other organisms). There are four main types:

    • Amoeboid protozoans: Move and capture food using pseudopodia ("false feet"), like Amoeba. Some have shells. Some, like Entamoeba, are parasites.

    • Flagellated protozoans: Have flagella for movement. Some are free-living, and some are parasites that cause diseases like sleeping sickness. An example is Trypanosoma.

    • Ciliated protozoans: Have many cilia for movement and to sweep food into their "mouth" (gullet). An example is Paramecium.

    • Sporozoans: Have a spore-like stage in their life cycle. A well-known example is Plasmodium, which causes malaria.

Simple Conclusion:

Kingdom Protista is a diverse group of mostly single-celled eukaryotes that live mainly in water. They include plant-like algae (Chrysophytes and Dinoflagellates), flexible Euglenoids, fungus-like Slime Moulds, and animal-like Protozoans. They are important in food chains and some cause diseases.


Kingdom Fungi

What is this section about?

This section describes the characteristics of fungi, a diverse group of heterotrophic organisms.

Simple Explanation:

Fungi are a unique group of organisms that are heterotrophic (meaning they get their food from other sources). They come in many shapes and sizes and live in various places. You've probably seen them as mold on bread or fruit, as mushrooms, or as white spots on plant leaves. Some are single-celled, like yeast (used for making bread and beer), while others cause diseases in plants and animals (like wheat rust). Some fungi are even used to make antibiotics (like Penicillium).

Fungi are found almost everywhere: in air, water, soil, and on plants and animals. They like warm, moist environments. That's why we refrigerate food – to slow down fungal and bacterial growth.

Most fungi (except yeast) are made of thread-like structures called hyphae. A network of hyphae is called a mycelium. Some hyphae have many nuclei inside a continuous tube (coenocytic hyphae), while others have walls dividing them into separate cells. The cell walls of fungi are made of chitin (the same material that makes up insect exoskeletons) and polysaccharides.

Fungi get their food in a few ways:

  • Saprophytes: They absorb nutrients from dead organic matter (like decaying plants and animals).

  • Parasites: They get nutrients from living organisms, harming them in the process.

  • Symbionts: They live in a close relationship with another organism, where both benefit. Examples include:

    • Lichens: A symbiosis between a fungus and algae.

    • Mycorrhiza: A symbiosis between a fungus and plant roots.

Fungi reproduce in several ways:

  • Vegetative reproduction: This is like cloning, where a part of the fungus breaks off and grows into a new individual. This can happen through fragmentation (breaking apart), fission (splitting), or budding (a small outgrowth forms).

  • Asexual reproduction: This involves the production of spores (reproductive cells). Different types of spores include conidia, sporangiospores, and zoospores.

  • Sexual reproduction: This involves the fusion of genetic material from two different fungi. It happens in three main steps:

    1. Plasmogamy: The cytoplasm (contents of the cells) of two fungi fuse together.

    2. Karyogamy: The nuclei (containing the DNA) of the two fungi fuse together.

    3. Meiosis: The fused nucleus undergoes a special type of cell division that creates haploid spores (cells with half the usual amount of DNA).

Sometimes, during sexual reproduction, there's a stage where the cells have two separate nuclei (dikaryotic stage or dikaryophase). Eventually, these nuclei fuse. The spores produced during sexual reproduction are formed in special structures called fruiting bodies (like mushrooms).

The different types of fungi are classified into different groups based on the structure of their mycelium, how they form spores, and the shape of their fruiting bodies.

Simple Conclusion:

Fungi are heterotrophic organisms that come in many forms and live in various environments. They are made of thread-like structures called hyphae, and they get their food as saprophytes, parasites, or symbionts. They reproduce both asexually and sexually, with sexual reproduction involving the fusion of cells and nuclei followed by meiosis to create spores. They are classified based on their structure and reproductive methods.

Phycomycetes

What is this section about?

This section describes one of the classes of fungi, called Phycomycetes.

Simple Explanation:

Phycomycetes are a group of fungi that like to live in wet environments:

  • Aquatic habitats: They live in water.

  • Damp places: They grow on decaying wood in moist areas.

  • Parasites on plants: Some live on plants and get their nutrients from them, harming the plant.

Their mycelium (the network of thread-like structures that make up the fungus) has two main characteristics:

  • Aseptate: It doesn't have cross-walls dividing the hyphae into individual cells.

  • Coenocytic: It has many nuclei within a single, continuous cytoplasm (the inside of the cell).

They reproduce in two main ways:

  • Asexual reproduction: This involves producing spores inside a structure called a sporangium. There are two types of asexual spores:

    • Zoospores: These spores have flagella (whip-like tails) and can swim.

    • Aplanospores: These spores don't have flagella and can't swim.

  • Sexual reproduction: This involves the fusion of two gametes (sex cells) to form a zygospore. The gametes can be:

    • Isogamous: Similar in size and shape.

    • Anisogamous or oogamous: Different in size and shape.

Some common examples of Phycomycetes are:

  • Mucor: A common type of mold.

  • Rhizopus: The bread mold you might see growing on old bread.

  • Albugo: A parasitic fungus that grows on mustard plants.

Simple Conclusion:

Phycomycetes are fungi that thrive in wet environments. Their mycelium lacks cross-walls and has many nuclei. They reproduce asexually using swimming or non-swimming spores and sexually by fusing gametes. Common examples include bread mold and some plant parasites.


Ascomycetes

What is this section about?

This section describes another class of fungi, called Ascomycetes, also known as sac-fungi.

Simple Explanation:

Ascomycetes, or sac-fungi, are a diverse group of fungi. Most are multicellular (made of many cells), like Penicillium (the source of penicillin), but some are unicellular (single-celled), like yeast (Saccharomyces), which is used for baking and brewing.

They can obtain nutrients in different ways:

  • Saprophytes: They decompose dead organic matter.

  • Decomposers: Same as saprophytes.

  • Parasites: They live on or in other organisms and obtain nutrients from them, often causing harm.

  • Coprophilous: They grow on animal dung.

Their mycelium (the network of hyphae) has two main characteristics:

  • Branched: The hyphae form a branching network.

  • Septate: The hyphae have cross-walls (septa) that divide them into individual cells.

They reproduce in two main ways:

  • Asexual reproduction: They produce spores called conidia. These spores are formed externally (exogenously) on specialized hyphae called conidiophores. When conidia germinate (start to grow), they form new mycelium.

  • Sexual reproduction: They produce spores called ascospores. These spores are formed internally (endogenously) inside sac-like structures called asci (singular: ascus). The asci are usually contained within fruiting bodies called ascocarps.

Some examples of Ascomycetes are:

  • Aspergillus: A common mold.

  • Claviceps: A parasitic fungus that grows on grains.

  • Neurospora: A fungus used extensively in genetic research.

  • Morels and truffles: These are edible and considered delicacies.

Simple Conclusion:

Ascomycetes, or sac-fungi, are a diverse group of fungi with branched and septate mycelium. They reproduce asexually by conidia and sexually by ascospores formed in asci. They include both multicellular molds and unicellular yeasts, and they can be decomposers, parasites, or grow on dung. Some are important in food production, medicine, and research, while others are edible delicacies.

Basidiomycetes

What is this section about?

This section describes another class of fungi, called Basidiomycetes, also known as club fungi.

Simple Explanation:

Basidiomycetes are a group of fungi that include familiar forms like:

  • Mushrooms: The kind you might eat.

  • Bracket fungi: These grow on the sides of trees and look like shelves or brackets.

  • Puffballs: These release a cloud of spores when they are mature.

They grow in different places:

  • Soil: On the ground.

  • Logs and tree stumps: On dead wood.

  • Living plant bodies: Some are parasites that grow on living plants, like rusts and smuts.

Their mycelium (the network of hyphae) has two main characteristics:

  • Branched: The hyphae form a branching network.

  • Septate: The hyphae have cross-walls (septa) that divide them into individual cells.

They reproduce in a few ways:

  • Asexual reproduction: They don't usually reproduce asexually with spores.

  • Vegetative reproduction: They can reproduce by fragmentation, where a piece of the mycelium breaks off and grows into a new fungus.

  • Sexual reproduction: This is their main way of reproducing. It's a bit more complex than in other fungi:

    1. They don't have distinct sex organs. Instead, two hyphae from different "mating types" fuse together.

    2. This fusion creates a dikaryotic cell, which means it has two nuclei (one from each parent hypha).

    3. This dikaryotic cell develops into a club-shaped structure called a basidium (plural: basidia).

    4. Inside the basidium, the two nuclei fuse together (karyogamy), and then a special type of cell division called meiosis occurs.

    5. Meiosis produces four basidiospores, which are located on the outside of the basidium.

    6. The basidia are contained within fruiting bodies called basidiocarps. The mushroom cap is an example of a basidiocarp.

Some common examples of Basidiomycetes are:

  • Agaricus: The common mushroom.

  • Ustilago: A parasitic fungus that causes smut diseases in plants.

  • Puccinia: A parasitic fungus that causes rust diseases in plants.

Simple Conclusion:

Basidiomycetes, or club fungi, include mushrooms, bracket fungi, and puffballs. They have branched and septate mycelium. They mainly reproduce sexually, with the formation of basidia and basidiospores within fruiting bodies. Some are decomposers, while others are plant parasites.

Deuteromycetes

What is this section about?

This section describes a group of fungi called Deuteromycetes, also known as "imperfect fungi."

Simple Explanation:

Deuteromycetes are called "imperfect fungi" because scientists have not observed them reproducing sexually. They only seem to reproduce asexually or vegetatively.

Here's why they are "imperfect":

  • Scientists classify fungi mainly based on their sexual reproduction. Since Deuteromycetes don't seem to have a sexual stage, it's hard to place them definitively in the other fungal classes (Ascomycetes or Basidiomycetes).

  • Sometimes, what was thought to be one fungus (based on its asexual form) is later found to have a sexual stage that looks completely different. The asexual form might have been classified as a Deuteromycete, while the sexual form was classified elsewhere. When scientists discover the connection, they reclassify the fungus into the correct group (usually Ascomycetes or Basidiomycetes).

Here are some characteristics of Deuteromycetes:

  • Reproduction: They reproduce only by asexual spores called conidia.

  • Mycelium: Their mycelium (the network of hyphae) is septate (has cross-walls) and branched.

  • Lifestyle: They can be saprophytes (decomposers of dead organic matter), parasites (living on other organisms), or decomposers of litter (dead plant material). Many play an important role in recycling minerals in the environment.

Some examples of Deuteromycetes are:

  • Alternaria: Some species are plant pathogens.

  • Colletotrichum: Some species cause diseases in plants.

  • Trichoderma: Some species are used as biocontrol agents against other fungi.

Simple Conclusion:

Deuteromycetes are called "imperfect fungi" because they lack a known sexual reproductive stage. They reproduce asexually by conidia. Once their sexual stage is discovered, they are usually reclassified into other fungal groups, mainly Ascomycetes or Basidiomycetes. They play various roles in the environment, including decomposition and parasitism

Kingdom Plantae

What is this section about?

This section describes the characteristics of plants, which belong to the Kingdom Plantae.

Simple Explanation:

Kingdom Plantae includes all the organisms we commonly call plants. They are all eukaryotes (their cells have a nucleus) and contain chlorophyll, which they use for photosynthesis (making their own food from sunlight).

However, there are a few exceptions:

  • Partially heterotrophic plants: Some plants get some of their nutrients from other sources.

    • Insectivorous plants: These plants trap and digest insects to get nutrients like nitrogen. Examples include bladderwort and Venus flytrap.

    • Parasites: These plants grow on other plants and get their nutrients from them, harming the host plant. An example is Cuscuta.

Plant cells have a typical eukaryotic structure, including:

  • Prominent chloroplasts: These are the organelles where photosynthesis takes place.

  • Cell wall: A rigid outer layer mainly made of cellulose.

Kingdom Plantae includes several major groups:

  • Algae

  • Bryophytes (mosses and liverworts)

  • Pteridophytes (ferns)

  • Gymnosperms (conifers and cycads)

  • Angiosperms (flowering plants)

Plants have a unique life cycle called alternation of generations. This means their life cycle has two distinct phases:

  • Diploid sporophyte: This phase has two sets of chromosomes.

  • Haploid gametophyte: This phase has one set of chromosomes.

These two phases alternate with each other. The length of each phase and whether they are free-living or dependent on each other varies in different plant groups.

Simple Conclusion:

Kingdom Plantae consists of eukaryotic organisms containing chlorophyll and commonly called plants. Most plants make their own food through photosynthesis, but some are partially heterotrophic. Plant cells have chloroplasts and cell walls made of cellulose. The plant kingdom includes algae, mosses, ferns, conifers, and flowering plants. Plants have a life cycle with alternating diploid and haploid phases called alternation of generations

Kingdom Animalia

What is this section about?

This section describes the characteristics of animals, which belong to the Kingdom Animalia.

Simple Explanation:

Kingdom Animalia includes all animals. They have several key characteristics:

  • Heterotrophic: They get their food by consuming other organisms (plants or other animals). They cannot make their own food like plants.

  • Eukaryotic: Their cells have a nucleus and other complex organelles.

  • Multicellular: They are made up of many cells.

  • Lack cell walls: Unlike plant cells, animal cells do not have rigid cell walls.

Animals depend on plants, either directly (by eating plants) or indirectly (by eating animals that eat plants), for their food.

They digest their food internally, within a digestive system or cavity. They store extra food as glycogen (a type of sugar) or fat. Their way of getting food is called holozoic nutrition, which means they ingest (swallow) their food.

Animals have a defined growth pattern. They grow to a certain size and shape as adults.

Most animals have well-developed sensory organs (like eyes, ears, and noses) and a nervous system (neuromotor mechanism) that allows them to sense their environment and react to it. Most animals can move (locomotion).

Animals reproduce sexually, usually with a male and female. The male and female reproduce through copulation, and the fertilized egg develops into an embryo.

Simple Conclusion:

Kingdom Animalia includes all animals, which are multicellular, eukaryotic organisms that lack cell walls and get their food by consuming other organisms. They digest food internally, store food as glycogen or fat, and have a defined growth pattern. Most have sensory and nervous systems and can move. They reproduce sexually.

Viruses, viroids, prions, and lichens

What is this section about?

This section discusses entities that are not included in Whittaker's five kingdoms: viruses, viroids, prions, and lichens.

Simple Explanation:

  • Viruses: These are not considered truly "living" because they don't have a cell structure. They are basically genetic material (DNA or RNA) enclosed in a protein coat. Outside a living cell, they are inert (inactive), like crystals. But once they infect a cell, they take over the cell's machinery to make copies of themselves, often destroying the host cell.

    • They are much smaller than bacteria and can pass through filters that trap bacteria.

    • They can be crystallized, showing they are not cells.

    • They are obligate parasites, meaning they can only reproduce inside a host cell.

    • Their genetic material can be either RNA or DNA, but never both.

    • The protein coat is called a capsid, which is made of smaller subunits called capsomeres.

    • Viruses cause diseases like the common cold, flu, mumps, smallpox, herpes, and AIDS in humans. In plants, they can cause mosaic patterns on leaves, leaf curling, yellowing, stunted growth, and other problems.

    • Viruses that infect bacteria are called bacteriophages.

  • Viroids: These are even simpler than viruses. They are just small pieces of RNA without a protein coat. They cause diseases in plants, such as potato spindle tuber disease.

  • Prions: These are infectious agents made of abnormally folded proteins. They are similar in size to viruses but are made of protein only. They cause diseases that affect the brain and nervous system, such as mad cow disease (bovine spongiform encephalopathy or BSE) in cattle and Creutzfeldt-Jakob disease (CJD) in humans.

  • Lichens: These are a combination of two different organisms living together in a mutually beneficial (symbiotic) relationship:

    • Algae (phycobiont): The algae perform photosynthesis and provide food for the fungus.

    • Fungus (mycobiont): The fungus provides a structure for the algae to live in and helps absorb water and minerals.

  • Lichens are so closely intertwined that they look like a single organism. They are very sensitive to air pollution and are used as pollution indicators because they don't grow in polluted areas.

Simple Conclusion:

Viruses, viroids, and prions are not considered living organisms in the same way as cells. Viruses are genetic material in a protein coat, viroids are just RNA, and prions are just protein. Lichens are a combination of an alga and a fungus living together. These entities are important to understand because they can cause diseases or play important roles in the environment.


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